| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/transdecoder/transdecoder/5.5.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/transdecoder/transdecoder/3.0.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/transdecoder/transdecoder/1.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/transdecoder/transdecoder/1.0 |
| transdecoder |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| transdecoder | 3.0.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: test.fa |
transdecoder_gff3: test.fa.transdecoder.gff3 transdecoder_bed: test.fa.transdecoder.bed transdecoder_cds: test.fa.transdecoder.cds transdecoder_pep: test.fa.transdecoder.pep |
test.fa raw/test.fa.transdecoder.gff3 raw/test.fa.transdecoder.bed raw/test.fa.transdecoder.cds raw/test.fa.transdecoder.pep |
| Test-2 |
input: test.fa training_sect|training|top_longest: 10 training_sect|training|training_selector: training_top |
transdecoder_gff3: test.fa.transdecoder.gff3 transdecoder_bed: test.fa.transdecoder.bed transdecoder_cds: test.fa.transdecoder.cds transdecoder_pep: test.fa.transdecoder.pep |
test.fa top/test.fa.transdecoder.gff3 top/test.fa.transdecoder.bed top/test.fa.transdecoder.cds top/test.fa.transdecoder.pep |
| Test-3 |
input: test.fa adv|gen_code: Mitochondrial-Arthropods |
transdecoder_gff3: test.fa.transdecoder.gff3 transdecoder_bed: test.fa.transdecoder.bed transdecoder_cds: test.fa.transdecoder.cds transdecoder_pep: test.fa.transdecoder.pep |
test.fa gencode/test.fa.transdecoder.gff3 gencode/test.fa.transdecoder.bed gencode/test.fa.transdecoder.cds gencode/test.fa.transdecoder.pep |
| Test-4 |
input: test.fa adv|stranded: True |
transdecoder_gff3: test.fa.transdecoder.gff3 transdecoder_bed: test.fa.transdecoder.bed transdecoder_cds: test.fa.transdecoder.cds transdecoder_pep: test.fa.transdecoder.pep |
test.fa strand/test.fa.transdecoder.gff3 strand/test.fa.transdecoder.bed strand/test.fa.transdecoder.cds strand/test.fa.transdecoder.pep |