Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_fastq/mothur_make_fastq/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_fastq/mothur_make_fastq/1.36.1.0 |
mothur_make_fastq |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$fasta' fasta.dat && ln -s '$qfile' qfile.dat && echo 'make.fastq( fasta=fasta.dat, qfile=qfile.dat #if $chooseformat.use == "yes": ,format=${chooseformat.format} #end if )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
fasta: Mock_S280_L001_R1_001_small.trim.contigs.fasta qfile: Mock_S280_L001_R1_001_small.trim.contigs.qual savelog: True |
name: value name: value |
Mock_S280_L001_R1_001_small.trim.contigs.fasta Mock_S280_L001_R1_001_small.trim.contigs.qual value |
Test-2 |
fasta: Mock_S280_L001_R1_001_small.trim.contigs.fasta qfile: Mock_S280_L001_R1_001_small.trim.contigs.qual chooseformat|format: illumina chooseformat|use: yes savelog: True |
name: value name: value |
Mock_S280_L001_R1_001_small.trim.contigs.fasta Mock_S280_L001_R1_001_small.trim.contigs.qual value |