| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ptmodel/PTModel/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ptmodel/PTModel/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ptmodel/PTModel/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ptmodel/PTModel/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ptmodel/PTModel/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ptmodel/PTModel/2.1.0 |
| PTModel |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in_positive: PTModel_1_input_positive.idXML in_negative: PTModel_1_input_negative.idXML c: 0.5 svm_type: C_SVC nu: 0.5 kernel_type: OLIGO degree: 1 border_length: 22 k_mer_length: 1 sigma: 5.0 max_positive_count: 1000 max_negative_count: 1000 redundant: False additive_cv: False cv|skip_cv: True cv|number_of_runs: 10 cv|number_of_partitions: 10 cv|degree_start: 1 cv|degree_step_size: 2 cv|degree_stop: 4 cv|c_start: 1.0 cv|c_step_size: 100.0 cv|c_stop: 1000.0 cv|nu_start: 0.1 cv|nu_step_size: 1.3 cv|nu_stop: 0.9 cv|sigma_start: 1.0 cv|sigma_step_size: 1.3 cv|sigma_stop: 15.0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
PTModel_1_input_positive.idXML PTModel_1_input_negative.idXML value |