Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.4.0.1 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.4.0.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.2.6.1 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.2.6.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.3 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.2 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.1 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.0 |
cardinal_combine |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-cardinal | 2.4.0 | package |
r-base | 3.6.1 | package |
r-ggplot2 | 3.2.1 | package |
r-maldiquantforeign | 0.12 | package |
r-maldiquant | 1.19.3 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
combine_conditional|combine_method: xy_shifts infiles: ['msidata_1.RData', 'msidata_2.RData', 'msidata_3.RData'] annotation_cond|annotation_files: ['annotations_file1.tabular', 'annotations_file2.tabular', 'annotations_file3.tabular'] combine_conditional|coordinates_file: xy_coordinates.tabular annotation_cond|tabular_header: True combine_conditional|column_names: 3 annotation_cond|annotation_tabular: annotation combine_conditional|column_y: 2 combine_conditional|column_x: 1 processed_true: False |
attributes: name attributes: name attributes: name |
msidata_1.RData msidata_2.RData msidata_3.RData annotations_file1.tabular annotations_file2.tabular annotations_file3.tabular xy_coordinates.tabular name |
Test-2 |
combine_conditional|combine_method: xy_shifts infiles: ['123_combined_picked.rdata', '123_combined_picked2.rdata'] combine_conditional|coordinates_file: xy_coordinates2.tabular combine_conditional|column_names: 3 centroids: True combine_conditional|column_y: 2 combine_conditional|column_x: 1 processed_true: True |
attributes: name attributes: name attributes: name |
123_combined_picked.rdata 123_combined_picked2.rdata xy_coordinates2.tabular name |
Test-3 |
annotation_cond|annotation_tabular: no_annotation combine_conditional|combine_method: automatic_combine processed_true: False infiles: ['msidata_1.RData', 'msidata_2.RData', 'msidata_3.RData'] |
attributes: name attributes: name attributes: name |
msidata_1.RData msidata_2.RData msidata_3.RData name |
Test-4 |
combine_conditional|combine_method: automatic_combine infiles: ['msidata_1.RData', 'msidata_2.RData'] annotation_cond|annotation_files: ['annotations_file1.tabular', 'annotations_file2.tabular'] annotation_cond|tabular_header: True annotation_cond|annotation_tabular: annotation processed_true: False |
attributes: name attributes: name attributes: name |
msidata_1.RData msidata_2.RData annotations_file1.tabular annotations_file2.tabular name |
Test-5 |
combine_conditional|combine_method: automatic_combine infiles: ['msidata_1.RData', '123_combined.RData'] annotation_cond|annotation_files: ['annotations_file1.tabular', '123_annotation.tabular'] annotation_cond|tabular_header: True annotation_cond|annotation_tabular: annotation processed_true: False |
attributes: name attributes: name attributes: name |
msidata_1.RData 123_combined.RData annotations_file1.tabular 123_annotation.tabular name |
Test-6 |
annotation_cond|annotation_tabular: no_annotation combine_conditional|combine_method: automatic_combine processed_true: False infiles: ['msidata_2.RData', '123_combined.RData'] |
attributes: name attributes: name attributes: name |
msidata_2.RData 123_combined.RData name |