| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.3 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.0 |
| cardinal_combine |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-cardinal | 1.12.1 | package |
| r-base | 3.5.1 | package |
| r-ggplot2 | 3.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
combine_conditional|combine_method: xy_shifts infiles: ['msidata_1.RData', 'msidata_2.RData', 'msidata_3.RData'] annotation_cond|annotation_files: ['annotations_file1.tabular', 'annotations_file2.tabular', 'annotations_file3.tabular'] combine_conditional|coordinates_file: xy_coordinates.tabular annotation_cond|tabular_header: True combine_conditional|column_names: 3 annotation_cond|annotation_tabular: annotation combine_conditional|column_y: 2 combine_conditional|column_x: 1 imzml_output: rdata_format |
attributes: name attributes: name attributes: name |
msidata_1.RData msidata_2.RData msidata_3.RData annotations_file1.tabular annotations_file2.tabular annotations_file3.tabular xy_coordinates.tabular name |
| Test-2 |
annotation_cond|annotation_tabular: no_annotation combine_conditional|combine_method: automatic_combine infiles: ['msidata_1.RData', 'msidata_2.RData', 'msidata_3.RData'] imzml_output: imzml_format |
attributes: name attributes: name attributes: name |
msidata_1.RData msidata_2.RData msidata_3.RData name |
| Test-3 |
combine_conditional|combine_method: automatic_combine infiles: ['msidata_1.RData', 'msidata_2.RData'] annotation_cond|annotation_files: ['annotations_file1.tabular', 'annotations_file2.tabular'] annotation_cond|tabular_header: True annotation_cond|annotation_tabular: annotation imzml_output: rdata_format |
attributes: name attributes: name attributes: name |
msidata_1.RData msidata_2.RData annotations_file1.tabular annotations_file2.tabular name |
| Test-4 |
combine_conditional|combine_method: automatic_combine infiles: ['msidata_1.RData', '123_combined.RData'] annotation_cond|annotation_files: ['annotations_file1.tabular', '123_annotation.tabular'] annotation_cond|tabular_header: True annotation_cond|annotation_tabular: annotation imzml_output: imzml_format |
attributes: name attributes: name attributes: name |
msidata_1.RData 123_combined.RData annotations_file1.tabular 123_annotation.tabular name |
| Test-5 |
annotation_cond|annotation_tabular: no_annotation combine_conditional|combine_method: automatic_combine infiles: ['msidata_2.RData', '123_combined.RData'] imzml_output: rdata_format |
attributes: name attributes: name attributes: name |
msidata_2.RData 123_combined.RData name |