| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/computational-metabolomics/dimspy_replicate_filter/dimspy_replicate_filter/2.0.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/computational-metabolomics/dimspy_replicate_filter/dimspy_replicate_filter/2.0.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/computational-metabolomics/dimspy_replicate_filter/dimspy_replicate_filter/1.4.0+galaxy0 |
| dimspy_replicate_filter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| dimspy | 2.0.0 | package |
| Additional information about this tool |
dimspy replicate-filter
--input '$hdf5_file_in'
--output '$hdf5_file_out'
#if $filelist
--filelist '$filelist'
#end if
--ppm $ppm
--replicates $replicates
--min-peak-present $min_peaks
#if $rsd_threshold
--rsd-threshold $rsd_threshold
#end if
--report '$report'
--ncpu \${GALAXY_SLOTS:-1}
&&
dimspy create-sample-list
--input '$hdf5_file_out'
--output '$samplelist'
--delimiter tab
&&
dimspy hdf5-pls-to-txt
--input '$hdf5_file_out'
--output .
--delimiter $delimiter
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
hdf5_file_in: pls.h5 replicates: 3 min_peaks: 2 ppm: 2.0 rsd_threshold: |
name: value name: value name: value |
pls.h5 value |
| Test-2 |
hdf5_file_in: pls_scan5.h5 replicates: 3 min_peaks: 2 ppm: 2.0 rsd_threshold: |
name: value |
pls_scan5.h5 value |