| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/recetox/matchms_convert/matchms_convert/0.27.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/recetox/matchms_convert/matchms_convert/0.25.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/recetox/matchms_convert/matchms_convert/0.24.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/recetox/matchms_convert/matchms_convert/0.23.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/recetox/matchms_convert/matchms_convert/0.22.0+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/recetox/matchms_convert/matchms_convert/0.20.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/recetox/matchms_convert/matchms_convert/0.19.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/recetox/matchms_convert/matchms_convert/0.17.0+galaxy0 |
| matchms_convert |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| matchms | 0.25.0 | package |
| Additional information about this tool |
python ${matchms_python_cli}
#if $output_file.output_format == "msp":
#if $output_file.export_style == "ms_lima":
&&
sh ${ms_lima_output}
#end if
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
spectral_library: similarity/RECETOX_Exposome_pesticides_HR_MS_20220323.msp harmonization_metadata: False output_file|output_format: mgf |
name: value |
similarity/RECETOX_Exposome_pesticides_HR_MS_20220323.msp value |
| Test-2 |
spectral_library: similarity/RECETOX_Exposome_pesticides_HR_MS_20220323.msp harmonization_metadata: False output_file|output_format: json |
name: value |
similarity/RECETOX_Exposome_pesticides_HR_MS_20220323.msp value |
| Test-3 |
spectral_library: convert/mgf_out.mgf harmonization_metadata: False output_file|export_peak_comments: False output_file|export_style: matchms output_file|output_format: msp |
name: value |
convert/mgf_out.mgf value |
| Test-4 |
spectral_library: convert/mgf_out.mgf harmonization_metadata: True output_file|export_peak_comments: False output_file|export_style: matchms output_file|output_format: msp |
name: value |
convert/mgf_out.mgf value |
| Test-5 |
spectral_library: convert/mgf_out.mgf harmonization_metadata: True output_file|export_peak_comments: True output_file|export_style: matchms output_file|output_format: msp |
name: value |
convert/mgf_out.mgf value |
| Test-6 |
spectral_library: convert/mgf_out.mgf harmonization_metadata: True output_file|export_peak_comments: False output_file|export_style: ms_lima output_file|output_format: msp |
name: value |
convert/mgf_out.mgf value |