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Revision: 9:71082dac170c

Repository 'deeptools_estimatereadfiltering'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering

estimateReadFiltering tool metadata

Miscellaneous

Name: estimateReadFiltering

Description: estimates the number of reads that would be filtered given certain criteria

Id: deeptools_estimatereadfiltering

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.3.2.0.0

Version: 3.3.2.0.0

Version command string: estimateReadFiltering --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.5.1.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.3.2.0.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.3.0.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.2.1.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.2.0.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.1.2.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.1.0.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.0.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.0.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_estimatereadfiltering/deeptools_estimatereadfiltering/3.0.0.0

deeptools_estimatereadfiltering

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

deeptools

3.3.2

package

samtools

1.9

package

Functional tests

name

inputs

outputs

required files

Test-1

multibam_conditional|bamfiles: ['paired_chr2L.bam', 'paired_chr2L.bam']
minMappingQuality: 10

attributes: name

paired_chr2L.bam
name