| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.1+galaxy4 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.1+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.0+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/scmap_index_cell/scmap_index_cell/1.6.0+galaxy0 |
| scmap_index_cell |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| scmap-cli | 0.1.0 | package |
| Additional information about this tool |
scmap-preprocess-sce.R --input-object "${input_single_cell_experiment}" --output-sce-object sce_object_preprocessed.rds &&
scmap-index-cell.R --input-object-file sce_object_preprocessed.rds --output-object-file '$output_single_cell_experiment' --random-seed '$random_seed' --remove-mat '${remove_mat}'
#if $train_id
--train-id '${train_id}'
#end if
#if $n_chunks
--number-chunks '$n_chunks'
#end if
#if $n_clusters
--number-clusters '$n_clusters'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_single_cell_experiment: select_features.rds remove_mat: True |
name: value |
select_features.rds value |