Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_tsne/scater_plot_tsne/1.22.0 |
toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_tsne/scater_plot_tsne/1.20.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_tsne/scater_plot_tsne/1.12.2 |
scater_plot_tsne |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-scater | 1.20.0 | package |
r-optparse | 1.6.6 | package |
r-workflowscriptscommon | 0.0.7 | package |
bioconductor-loomexperiment | 1.10.1 | package |
r-rtsne | 0.15 | package |
Additional information about this tool |
Rscript '$__tool_directory__/scater-plot-tsne.R' -i '$input_loom' #if str($colour_by).strip(): --colour-by '$colour_by' #end if #if str($size_by).strip(): --size-by '$size_by' #end if #if str($shape_by).strip(): --shape-by '$shape_by' #end if -o '$output_plot'
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_loom: scater_qcready.loom colour_by: Treatment shape_by: Mutation_Status |
name: value |
scater_qcready.loom value |