| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_primer_design/mothur_primer_design/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_primer_design/mothur_primer_design/1.36.1.0 |
| mothur_primer_design |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$fasta' fasta.dat &&
ln -s '$otu' otu.dat &&
ln -s '$name' name.dat &&
ln -s '$count' count.dat &&
echo 'primer.design(
fasta=fasta.dat,
list=otu.dat,
#if $label:
label=$label,
#end if
otulabel=$otulabel,
#if $name:
name=name.dat,
#end if
#if $count:
count=count.dat,
#end if
#if $cutoff:
cutoff=$cutoff,
#end if
#if $mintm:
mintm=$mintm,
#end if
#if $maxtm:
maxtm=$maxtm,
#end if
pdiffs=$pdiffs,
length=$length,
processors='\${GALAXY_SLOTS:-8}'
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta: amazon.align_head otu: amazon.align_head.list label: 0.30 otulabel: Otu1 savelog: True |
name: value name: value name: value name: value |
amazon.align_head amazon.align_head.list value |