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Repository revision

Revision: 7:3c05abb4452e

Repository 'microsatellite_ngs'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs

Combine mapped faux paired-end reads tool metadata

Miscellaneous

Name: Combine mapped faux paired-end reads

Description: and get the reference STR allele from the reference genome

Id: PEsortedSAM2readprofile

Guid: toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/PEsortedSAM2readprofile/1.0.0

Version: 1.0.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/PEsortedSAM2readprofile/1.0.0 (this tool)

PEsortedSAM2readprofile

Requirements (dependencies defined in the <requirements> tag set)

No requirements defined

Functional tests

name

inputs

outputs

required files

Test-1

maxoriginalreadlength: 250
maxTRlength: 100
flankedbasesSAM: samplesortedPESAM_C.sam
twobitref: shifted.2bit

output: samplePESAM_2_profile_C.txt

samplesortedPESAM_C.sam
shifted.2bit
samplePESAM_2_profile_C.txt