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Repository revision

Revision: 7:3c05abb4452e

Repository 'microsatellite_ngs'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs

Convert informative read depth to sequencing depth tool metadata

Miscellaneous

Name: Convert informative read depth to sequencing depth

Description: for flank-based mapping of microsatellites

Id: readdepth2seqdepth

Guid: toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/readdepth2seqdepth/1.0.0

Version: 1.0.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/readdepth2seqdepth/1.0.0 (this tool)

readdepth2seqdepth

Requirements (dependencies defined in the <requirements> tag set)

No requirements defined

Functional tests

name

inputs

outputs

required files

Test-1

flanksize: 20
repeatlength: 10
readlength: 100
infodepth: 5
probprediction: 0.9

output: readdepth2seqdepth.out

readdepth2seqdepth.out