Repository revision
9:b9fe5cf8f2bc

Repository 'mothur_mimarks_attributes'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_mimarks_attributes

Mimarks.attributes tool metadata
Miscellaneous
Reads bioSample Attributes xml and generates source for get.mimarkspackage command
mothur_mimarks_attributes
toolshed.g2.bx.psu.edu/repos/iuc/mothur_mimarks_attributes/mothur_mimarks_attributes/1.39.5.0
1.39.5.0
mothur "#help()" | sed '7q;d' | cut -d" " -f2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_mimarks_attributes/mothur_mimarks_attributes/1.39.5.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_mimarks_attributes/mothur_mimarks_attributes/1.36.1.0
mothur_mimarks_attributes
Requirements (dependencies defined in the <requirements> tag set)
name version type
mothur 1.39.5 package
Additional information about this tool
set -o pipefail; export TERM=vt100; 

## create symlinks to input datasets
ln -s '$biosample_in' biosample_in.dat &&

echo 'mimarks.attributes(
    xml=biosample_in.dat
)'
| sed 's/ //g'  ## mothur trips over whitespace
| mothur
| tee mothur.out.log
    
None
False
Functional tests
name inputs outputs required files
Test-1 biosample_in: biosample.xml
savelog: True
name: value
name: value
biosample.xml
value