| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/ont_fast5_api_single_to_multi_fast5/ont_fast5_api_single_to_multi_fast5/3.1.3+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/ont_fast5_api_single_to_multi_fast5/ont_fast5_api_single_to_multi_fast5/3.1.3+galaxy0 |
| ont_fast5_api_single_to_multi_fast5 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ont-fast5-api | 3.1.3 | package |
| hdf5 | 1.10.5 | package |
| Additional information about this tool |
## initialize
mkdir -p './data' &&
tar -xf '$input_path' -C './data' &&
## run
single_to_multi_fast5
--recursive
## required
--input_path './data'
--save_path './results'
## optional
#if $compression != 'none'
--compression '$compression'
#end if
--batch_size $batch_size
--threads \${GALAXY_SLOTS:-4}
## create tarball
&& find './results' -type f -name '*.fast5' | tar --transform 's/.*\///g' -cvf './results.fast5.tar' --files-from=/dev/stdin
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_path: single.fast5.tar |
name: value |
single.fast5.tar value |
| Test-2 |
input_path: single.fast5.tar batch_size: 3 compression: vbz |
name: value |
single.fast5.tar value |
| Test-3 |
input_path: single.fast5.tar compression: vbz_legacy_v0 |
name: value |
single.fast5.tar value |
| Test-4 |
input_path: single.fast5.tar compression: gzip |
name: value |
single.fast5.tar value |