| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/abyss/abyss-pe/2.2.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/abyss/abyss-pe/2.2.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/abyss/abyss-pe/2.2.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/abyss/abyss-pe/2.0.1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/abyss/abyss-pe/1.9.0.0 |
| abyss-pe |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| abyss | 2.2.3 | package |
| bwa | 0.7.17 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
lib_repeat_0|reads|reads1: assembly_sample-R1.fastq lib_repeat_0|reads|reads2: assembly_sample-R2.fastq lib_repeat_0|reads|reads_selector: paired k: 50 |
name: value name: value name: value name: value name: value name: value name: value |
assembly_sample-R1.fastq assembly_sample-R2.fastq value |
| Test-2 |
se_reads: ['assembly_sample-R1.fastq', 'assembly_sample-R2.fastq'] k: 50 |
name: value name: value name: value name: value name: value |
assembly_sample-R1.fastq assembly_sample-R2.fastq value |
| Test-3 |
se_reads: ['assembly_sample-R1.fastq', 'assembly_sample-R2.fastq'] long_seqs: assembly_sample-R2.fastq k: 50 |
name: value name: value name: value name: value name: value name: value |
assembly_sample-R1.fastq assembly_sample-R2.fastq assembly_sample-R2.fastq value |