| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_accuratemasssearch/AccurateMassSearch/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_accuratemasssearch/AccurateMassSearch/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_accuratemasssearch/AccurateMassSearch/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_accuratemasssearch/AccurateMassSearch/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_accuratemasssearch/AccurateMassSearch/2.1.0 |
| AccurateMassSearch |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: ConsensusMapNormalizer_input.consensusXML positive_adducts: CHEMISTRY/PositiveAdducts.tsv negative_adducts: CHEMISTRY/NegativeAdducts.tsv db|mapping: CHEMISTRY/HMDBMappingFile.tsv db|struct: CHEMISTRY/HMDB2StructMapping.tsv algorithm|mass_error_value: 5.0 algorithm|mass_error_unit: ppm algorithm|ionization_mode: positive algorithm|isotopic_similarity: False algorithm|use_feature_adducts: False algorithm|keep_unidentified_masses: False algorithm|mzTab|exportIsotopeIntensities: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
ConsensusMapNormalizer_input.consensusXML CHEMISTRY/PositiveAdducts.tsv CHEMISTRY/NegativeAdducts.tsv CHEMISTRY/HMDBMappingFile.tsv CHEMISTRY/HMDB2StructMapping.tsv value |
| Test-2 |
in: AccurateMassSearch_2_input.featureXML positive_adducts: AMS_PositiveAdducts.tsv negative_adducts: AMS_NegativeAdducts.tsv db|mapping: AMS_test_Mapping.tsv db|struct: AMS_test_Struct.tsv algorithm|mass_error_value: 5.0 algorithm|mass_error_unit: ppm algorithm|ionization_mode: positive algorithm|isotopic_similarity: False algorithm|use_feature_adducts: False algorithm|keep_unidentified_masses: False algorithm|mzTab|exportIsotopeIntensities: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_annotation_FLAG'] |
name: value name: value name: value |
AccurateMassSearch_2_input.featureXML AMS_PositiveAdducts.tsv AMS_NegativeAdducts.tsv AMS_test_Mapping.tsv AMS_test_Struct.tsv value |
| Test-3 |
in: AccurateMassSearch_2_input.featureXML positive_adducts: AMS_PositiveAdducts.tsv negative_adducts: AMS_NegativeAdducts.tsv db|mapping: AMS_test_Mapping.tsv db|struct: AMS_test_Struct.tsv algorithm|mass_error_value: 5.0 algorithm|mass_error_unit: ppm algorithm|ionization_mode: positive algorithm|isotopic_similarity: False algorithm|use_feature_adducts: False algorithm|keep_unidentified_masses: False algorithm|mzTab|exportIsotopeIntensities: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_annotation_FLAG'] |
name: value name: value name: value |
AccurateMassSearch_2_input.featureXML AMS_PositiveAdducts.tsv AMS_NegativeAdducts.tsv AMS_test_Mapping.tsv AMS_test_Struct.tsv value |