Galaxy |

Repository revision

Revision: 16:9664a6c00fd1

Repository 'scanpy_scale_data'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data

Scanpy ScaleData tool metadata

Miscellaneous

Name: Scanpy ScaleData

Description: to make expression variance the same for all genes

Id: scanpy_scale_data

Guid: toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.6.0+galaxy0

Version: 1.6.0+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.7.2+galaxy0

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.6.0+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.4.3+galaxy10

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.4.3+galaxy9

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.4.3+galaxy8

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.4.3+galaxy6

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.4.3+galaxy0

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.4.2+galaxy0

toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.3.2+galaxy1

scanpy_scale_data

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

scanpy-scripts

0.3.2

package

Functional tests

name

inputs

outputs

required files

Test-1

input_obj_file: find_variable_genes.h5
input_format: anndata
output_format: anndata
zero_center: True
scale_max: 10

name: value

find_variable_genes.h5
value