| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqkit_translate/seqkit_translate/2.10.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqkit_translate/seqkit_translate/2.9.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqkit_translate/seqkit_translate/2.8.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqkit_translate/seqkit_translate/2.3.1+galaxy1 |
| seqkit_translate |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| seqkit | 2.9.0 | package |
| Additional information about this tool |
seqkit translate
'$input'
-o '$output'
#if $translate_or_remove_unknown.selector == 'trimming':
$translate_or_remove_unknown.trim
#elif $translate_or_remove_unknown.selector == 'translate':
$translate_or_remove_unknown.allow_unknown_codon
#end if
$append_frame
$clean
#if $frame
-f '$frame'
#end if
$init_codon_as_M
#if $transl_table
-T '$transl_table'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: input1.fastq.gz |
name: value |
input1.fastq.gz value |
| Test-2 |
input: input1.fasta.gz frame: ['2', '3'] append_frame: True transl_table: 3 clean: True init_codon_as_M: True |
name: value |
input1.fasta.gz value |
| Test-3 |
input: input1.fastq.gz translate_or_remove_unknown|trim: True |
name: value |
input1.fastq.gz value |