Repository revision
7:13ad599d3fe3

Repository 'qiime_filter_taxa_from_otu_table'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_taxa_from_otu_table

Filter taxa from an OTU table tool metadata
Miscellaneous
(filter_taxa_from_otu_table)
qiime_filter_taxa_from_otu_table
toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_taxa_from_otu_table/qiime_filter_taxa_from_otu_table/1.9.1.0
1.9.1.0
filter_taxa_from_otu_table.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_taxa_from_otu_table/qiime_filter_taxa_from_otu_table/1.9.1.0 (this tool)
qiime_filter_taxa_from_otu_table
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 metadata_field: taxonomy
input_otu_table_fp: filter_taxa_from_otu_table/otu_table.biom
positive_taxa: p__Bacteroidetes,p__Firmicutes
attributes: name
filter_taxa_from_otu_table/otu_table.biom
name
Test-2 metadata_field: taxonomy
input_otu_table_fp: filter_taxa_from_otu_table/otu_table.biom
negative_taxa: p__Bacteroidetes,p__Firmicutes
attributes: name
filter_taxa_from_otu_table/otu_table.biom
name
Test-3 metadata_field: taxonomy
input_otu_table_fp: filter_taxa_from_otu_table/otu_table.biom
positive_taxa: p__Firmicutes
negative_taxa: c__Clostridia
attributes: name
filter_taxa_from_otu_table/otu_table.biom
name