| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.12 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.5+gx1 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.5 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.4.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.3 |
| minimap2 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| minimap2 | 2.17 | package |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fasta1.fa reference_source|ref_file: bwa-mem-mt-genome.fa fastq_input|analysis_type_selector: sr fastq_input|fastq_input_selector: single |
attributes: name |
bwa-mem-mt-genome.fa bwa-mem-fasta1.fa name |
| Test-2 |
reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fasta1.fa io_options|output_format: CRAM reference_source|ref_file: bwa-mem-mt-genome.fa fastq_input|analysis_type_selector: sr fastq_input|fastq_input_selector: single |
attributes: name |
bwa-mem-mt-genome.fa bwa-mem-fasta1.fa name |
| Test-3 |
reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fastq1.fq reference_source|ref_file: bwa-mem-mt-genome.fa fastq_input|fastq_input_selector: paired fastq_input|fastq_input2: bwa-mem-fastq2.fq |
attributes: name |
bwa-mem-mt-genome.fa bwa-mem-fastq1.fq bwa-mem-fastq2.fq name |
| Test-4 |
reference_source|reference_source_selector: history fastq_input|fastq_input1: bwa-mem-fastq1.fq.gz reference_source|ref_file: bwa-mem-mt-genome.fa fastq_input|fastq_input_selector: paired fastq_input|fastq_input2: bwa-mem-fastq2.fq |
attributes: name |
bwa-mem-mt-genome.fa bwa-mem-fastq1.fq.gz bwa-mem-fastq2.fq name |
| Test-5 |
reference_source|reference_source_selector: history fastq_input|fastq_input1: paired collection reference_source|ref_file: bwa-mem-mt-genome.fa fastq_input|fastq_input_selector: paired_collection |
attributes: name |
bwa-mem-mt-genome.fa bwa-mem-fastq1.fq bwa-mem-fastq2.fq name |
| Test-6 |
reference_source|reference_source_selector: cached fastq_input|fastq_input1: bwa-mem-fasta1.fa reference_source|ref_file: bwa-mem-mt-genome fastq_input|analysis_type_selector: sr fastq_input|fastq_input_selector: single |
attributes: name |
bwa-mem-fasta1.fa name |
| Test-7 |
alignment_options|s: 40 alignment_options|E2: 1 alignment_options|O2: 32 reference_source|reference_source_selector: cached fastq_input|fastq_input1: bwa-mem-fasta1.fa alignment_options|z: 400 alignment_options|E: 2 alignment_options|B: 8 alignment_options|A: 2 alignment_options|O: 12 reference_source|ref_file: bwa-mem-mt-genome fastq_input|analysis_type_selector: sr fastq_input|fastq_input_selector: single |
attributes: name |
bwa-mem-fasta1.fa name |
| Test-8 |
reference_source|reference_source_selector: history fastq_input|fastq_input1: mini_reads.fq io_options|output_format: paf reference_source|ref_file: mini_reads.fq fastq_input|analysis_type_selector: ava-ont fastq_input|fastq_input_selector: single |
attributes: name |
mini_reads.fq name |
| Test-9 |
reference_source|reference_source_selector: history fastq_input|fastq_input1: minimap2-self-homology.fasta reference_source|ref_file: minimap2-self-homology.fasta fastq_input|analysis_type_selector: self-homology fastq_input|fastq_input_selector: single |
attributes: name |
minimap2-self-homology.fasta name |