| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.2a1 |
| toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.2a (this tool) |
| rna_starsolo |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| star | 2.7.2a | package |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input2: 41737_R2.fastq.sub240k.gz soloCBwhitelist: 737K-august-2016.small.txt.gz input1: 41737_R1.fastq.sub240k.gz solo|params|chemistry: CR2 refGenomeSource|genomeFastaFiles: SNORD83B.22.fa refGenomeSource|geneSource: history solo|soloStrand: Forward refGenomeSource|GTFconditional|GTFselect: with-gtf solo|soloUMIdedup: 1MM_All refGenomeSource|genomeSAindexNbases: 5 solo|soloFeatures: Gene refGenomeSource|GTFconditional|sjdbGTFfile: SNORD83B.22.gtf refGenomeSource|GTFconditional|sjdbOverhang: 75 |
attributes: name attributes: name attributes: name |
41737_R1.fastq.sub240k.gz 41737_R2.fastq.sub240k.gz 737K-august-2016.small.txt.gz SNORD83B.22.fa SNORD83B.22.gtf name |
| Test-2 |
input2: 41737_R2.fastq.sub240k.gz soloCBwhitelist: 737K-august-2016.small.txt.gz input1: 41737_R1.fastq.sub240k.gz solo|params|chemistry: custom refGenomeSource|genomeFastaFiles: SNORD83B.22.fa refGenomeSource|geneSource: history solo|soloStrand: Forward solo|params|soloCBlen: 16 refGenomeSource|GTFconditional|GTFselect: with-gtf solo|soloUMIdedup: 1MM_Directional refGenomeSource|GTFconditional|sjdbGTFfile: SNORD83B.22.gtf solo|params|soloCBstart: 1 refGenomeSource|genomeSAindexNbases: 5 solo|soloFeatures: GeneFull solo|params|soloUMIlen: 10 refGenomeSource|GTFconditional|sjdbOverhang: 75 solo|params|soloUMIstart: 17 |
attributes: name |
41737_R1.fastq.sub240k.gz 41737_R2.fastq.sub240k.gz 737K-august-2016.small.txt.gz SNORD83B.22.fa SNORD83B.22.gtf name |