Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_assembleperead/stacks_assembleperead/1.46.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_assembleperead/stacks_assembleperead/1.46.0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_assembleperead/stacks_assembleperead/1.42.0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_assembleperead/stacks_assembleperead/1.40.1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_assembleperead/stacks_assembleperead/1.40.0 |
stacks_assembleperead |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 1.46 | package |
velvet | 1.2.10 | package |
stacks_summary | 1.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
stacks_col: list collection reads: ['demultiplexed/PopA_01.2.fq', 'demultiplexed/PopA_02.2.fq'] |
genotypes/batch_1.catalog.alleles.tsv genotypes/batch_1.catalog.snps.tsv genotypes/batch_1.catalog.tags.tsv genotypes/PopA_01.alleles.tsv genotypes/PopA_01.matches.tsv genotypes/PopA_01.snps.tsv genotypes/PopA_01.tags.tsv genotypes/PopA_02.alleles.tsv genotypes/PopA_02.matches.tsv genotypes/PopA_02.snps.tsv genotypes/PopA_02.tags.tsv demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.2.fq |
|
Test-2 |
stacks_col: list collection reads: ['demultiplexed/PopA_01.2.fq', 'demultiplexed/PopA_02.2.fq'] velvet|contig_length: 20 velvet|use_velvet: yes |
name: value |
genotypes/batch_1.catalog.alleles.tsv genotypes/batch_1.catalog.snps.tsv genotypes/batch_1.catalog.tags.tsv genotypes/PopA_01.alleles.tsv genotypes/PopA_01.matches.tsv genotypes/PopA_01.snps.tsv genotypes/PopA_01.tags.tsv genotypes/PopA_02.alleles.tsv genotypes/PopA_02.matches.tsv genotypes/PopA_02.snps.tsv genotypes/PopA_02.tags.tsv demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.2.fq value |