| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/tbl2gff3/tbl2gff3/1.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/tbl2gff3/tbl2gff3/1.1 |
| tbl2gff3 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bcbiogff | 0.6.4 | package |
| Additional information about this tool |
python '$__tool_directory__/tbl2gff3.py'
'$table'
'$rid'
'$begin'
'$end'
#if $type:
--type '$type'
#end if
#if $score:
--score '$score'
#end if
#if $source:
--source '$source'
#end if
#if str($strand.strand_select) == 'infer':
--strand_infer
#else if str($strand.strand_select) != "none":
--strand_${strand.strand_select} '${strand.strand}'
#end if
#for $a in $attributes
-a '${a.key}:${a.val}'
#end for
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
table: input.tab rid: 1 begin: 5 end: 6 score: 14 strand|strand: 1 strand|strand_select: value attributes_0|key: e-value attributes_0|val: 7 attributes_1|key: hit attributes_1|val: 9 attributes_2|key: GI attributes_2|val: 11 attributes_3|key: test attributes_3|val: one attributes_4|key: test attributes_4|val: two |
name: value |
input.tab value |
| Test-2 |
table: infer.tab rid: 1 begin: 2 end: 3 strand|strand_select: infer |
name: value |
infer.tab value |