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Repository revision

Revision: 3:0b4bd722367d

Repository 'presto_alignsets'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/presto_alignsets

pRESTO AlignSets tool metadata

Miscellaneous

Name: pRESTO AlignSets

Description: Multiple-align sequences with the same barcodes.

Id: presto_alignsets

Guid: toolshed.g2.bx.psu.edu/repos/iuc/presto_alignsets/presto_alignsets/0.6.2+galaxy0

Version: 0.6.2+galaxy0

Version command string: AlignSets.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/presto_alignsets/presto_alignsets/0.6.2+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/presto_alignsets/presto_alignsets/0.6.2

toolshed.g2.bx.psu.edu/repos/iuc/presto_alignsets/presto_alignsets/0.5.4

presto_alignsets

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

presto

0.6.2

package

Additional information about this tool

Command:

ln -s '$fastq_in' in.fastq &&
        AlignSets.py muscle
          --nproc "\${GALAXY_SLOTS:-1}"
          -s in.fastq
          --bf '$bf'
          $div
          --outname=tmp
          #if $capture_log
            --log '$log_out'
          #end if

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

fastq_in: presto_alignsets_test_in.fastq

name: value

presto_alignsets_test_in.fastq
value