Repository revision
0:0094893f5001

Repository 'cat_bins'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cat_bins

CAT bins tool metadata
Miscellaneous
CAT bins
annotate with taxonomic classification
cat_bins
toolshed.g2.bx.psu.edu/repos/iuc/cat_bins/cat_bins/5.0.3.0
5.0.3.0
CAT --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/cat_bins/cat_bins/5.0.3.1
toolshed.g2.bx.psu.edu/repos/iuc/cat_bins/cat_bins/5.0.3.0 (this tool)
cat_bins
Requirements (dependencies defined in the <requirements> tag set)
name version type
cat 5.0.3 package
Functional tests
name inputs outputs required files
Test-1 mags: genome2.fna
db|cat_builtin: CAT_prepare_test
db|db_src: cached
select_outputs: bin2classification
attributes: name
genome2.fna
name
Test-2 mags: genome3.fna
db|cat_builtin: CAT_prepare_test
db|db_src: cached
select_outputs: bin2classification
attributes: name
genome3.fna
name
Test-3 mags: ['genome2.fna', 'genome3.fna']
db|cat_builtin: CAT_prepare_test
db|db_src: cached
select_outputs: bin2classification
attributes: name
genome2.fna
genome3.fna
name
Test-4 mags: ['genome2.fna', 'genome3.fna']
select_outputs: predicted_proteins_faa
names|add_names: both
db|db_src: cached
db|cat_builtin: CAT_prepare_test
summarise: classification
attributes: name
attributes: name
attributes: name
genome2.fna
genome3.fna
name