Repository revision
4:576963db5f1b

Repository 'vsearch'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/vsearch

VSearch alignment tool metadata
Miscellaneous
vsearch_alignment
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_alignment/1.9.7.0
1.9.7.0
vsearch --version | head -n 1 | awk '{print $2}' | sed 's/,//'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_alignment/2.8.3.0
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_alignment/1.9.7.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_alignment/1.1.3.1
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_alignment/1.1.3.0
vsearch_alignment
Requirements (dependencies defined in the <requirements> tag set)
name version type
vsearch 1.9.7 package
Functional tests
name inputs outputs required files
Test-1 acceptall: False
userfields_output|userfields: ['query', 'target']
query_cov: 0.95
infile: Rfam_11_0.repr.fasta.bz2
id: 0.97
outfile: alignment_result1.fasta
Rfam_11_0.repr.fasta.bz2
alignment_result1.fasta