Repository revision
4:576963db5f1b

Repository 'vsearch'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/vsearch

VSearch chimera detection tool metadata
Miscellaneous
vsearch_chimera_detection
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_chimera_detection/1.9.7.0
1.9.7.0
vsearch --version | head -n 1 | awk '{print $2}' | sed 's/,//'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_chimera_detection/2.8.3.0
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_chimera_detection/1.9.7.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_chimera_detection/1.1.3.0
vsearch_chimera_detection
Requirements (dependencies defined in the <requirements> tag set)
name version type
vsearch 1.9.7 package
Functional tests
name inputs outputs required files
Test-1 detection_mode|detection_mode_select: denovo
detection_mode|infile_denovo: PR2-18S-rRNA-V4.derep.fsa.bz2
outputs: uchimeout
outfile: chimera_result1.fasta
uchimeout: chimera_uchimeout_result1.tabular
PR2-18S-rRNA-V4.derep.fsa.bz2
chimera_result1.fasta
chimera_uchimeout_result1.tabular