Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/2.8.3.0 |
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/1.9.7.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/1.1.3.0 |
vsearch_clustering |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
vsearch | 1.9.7 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
usersort: True maxrejects: 2 outputs: ['--centroids', '--blast6out', '--notmatched'] infile: BioMarKs5k.fsa.bz2 clustering_mode|clustering_mode_select: cluster_smallmem maxaccepts: 1 id: 0.99 sizeout: True |
centroids: clustering_centroids_result2.fasta blast6out: clustering_blast6out_result2.tab notmatched: clustering_notmatched_result2.fasta |
BioMarKs5k.fsa.bz2 clustering_centroids_result2.fasta clustering_blast6out_result2.tab clustering_notmatched_result2.fasta |
Test-2 |
usersort: True maxrejects: 2 outputs: --centroids infile: BioMarKs5k.fsa.bz2 clustering_mode|clustering_mode_select: cluster_smallmem uc: True maxaccepts: 1 id: 0.99 sizeout: True |
centroids: clustering_centroids_result2.fasta uc_outfile: clustering_uc_result3.uc |
BioMarKs5k.fsa.bz2 clustering_centroids_result2.fasta clustering_uc_result3.uc |
Test-3 |
usersort: True maxrejects: 2 iddef: 0 infile: BioMarKs5k.fsa.bz2 clustering_mode|clustering_mode_select: cluster_smallmem outputs: --centroids maxaccepts: 1 id: 0.99 sizeout: True |
centroids: clustering_centroids_result4.fasta |
BioMarKs5k.fsa.bz2 clustering_centroids_result4.fasta |
Test-4 |
usersort: True maxrejects: 2 qmask: none outputs: --centroids infile: BioMarKs5k.fsa.bz2 clustering_mode|clustering_mode_select: cluster_fast maxaccepts: 1 id: 0.99 sizeout: False |
centroids: clustering_centroids_result1.fasta |
BioMarKs5k.fsa.bz2 clustering_centroids_result1.fasta |