Repository revision
4:576963db5f1b

Repository 'vsearch'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/vsearch

VSearch clustering tool metadata
Miscellaneous
vsearch_clustering
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/1.9.7.0
1.9.7.0
vsearch --version | head -n 1 | awk '{print $2}' | sed 's/,//'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/2.8.3.0
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/1.9.7.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/1.1.3.0
vsearch_clustering
Requirements (dependencies defined in the <requirements> tag set)
name version type
vsearch 1.9.7 package
Functional tests
name inputs outputs required files
Test-1 usersort: True
maxrejects: 2
outputs: ['--centroids', '--blast6out', '--notmatched']
infile: BioMarKs5k.fsa.bz2
clustering_mode|clustering_mode_select: cluster_smallmem
maxaccepts: 1
id: 0.99
sizeout: True
centroids: clustering_centroids_result2.fasta
blast6out: clustering_blast6out_result2.tab
notmatched: clustering_notmatched_result2.fasta
BioMarKs5k.fsa.bz2
clustering_centroids_result2.fasta
clustering_blast6out_result2.tab
clustering_notmatched_result2.fasta
Test-2 usersort: True
maxrejects: 2
outputs: --centroids
infile: BioMarKs5k.fsa.bz2
clustering_mode|clustering_mode_select: cluster_smallmem
uc: True
maxaccepts: 1
id: 0.99
sizeout: True
centroids: clustering_centroids_result2.fasta
uc_outfile: clustering_uc_result3.uc
BioMarKs5k.fsa.bz2
clustering_centroids_result2.fasta
clustering_uc_result3.uc
Test-3 usersort: True
maxrejects: 2
iddef: 0
infile: BioMarKs5k.fsa.bz2
clustering_mode|clustering_mode_select: cluster_smallmem
outputs: --centroids
maxaccepts: 1
id: 0.99
sizeout: True
centroids: clustering_centroids_result4.fasta
BioMarKs5k.fsa.bz2
clustering_centroids_result4.fasta
Test-4 usersort: True
maxrejects: 2
qmask: none
outputs: --centroids
infile: BioMarKs5k.fsa.bz2
clustering_mode|clustering_mode_select: cluster_fast
maxaccepts: 1
id: 0.99
sizeout: False
centroids: clustering_centroids_result1.fasta
BioMarKs5k.fsa.bz2
clustering_centroids_result1.fasta