| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_dereplication/2.8.3.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_dereplication/1.9.7.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_dereplication/1.1.3.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_dereplication/1.1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_dereplication/1.1.3.0 |
| vsearch_dereplication |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| vsearch | 1.9.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
topn: 10000 minuniquesize: 1 infile: AF091148_first_rep.fsa.bz2 strand: both maxuniquesize: 100000 |
outfile: dereplication_result1.fasta |
AF091148_first_rep.fsa.bz2 dereplication_result1.fasta |
| Test-2 |
maxuniquesize: 100000 minuniquesize: 1 topn: sizeout: True infile: AF091148_first_rep.fsa.bz2 strand: both |
outfile: dereplication_result2.fasta |
AF091148_first_rep.fsa.bz2 dereplication_result2.fasta |
| Test-3 |
uc: True minuniquesize: 1 topn: 10000 sizeout: True infile: AF091148_first_rep.fsa.bz2 strand: both maxuniquesize: 100000 |
outfile: dereplication_result2.fasta uc_outfile: dereplication_uc_result3.fasta |
AF091148_first_rep.fsa.bz2 dereplication_result2.fasta dereplication_uc_result3.fasta |