| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_search/2.8.3.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_search/1.9.7.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_search/1.1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_search/1.1.3.0 |
| vsearch_search |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| vsearch | 1.9.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
dbmask: none dbfile: three_human_mRNA.fasta outputs: ['--blast6out', '--dbmatched'] adv_opts|top_hits_only: True adv_opts|adv_opts_selector: advanced queryfile: query.fasta |
dbmatched: search_dbmatched_result1.fasta blast6out: search_blast6out_result1.tabular |
query.fasta three_human_mRNA.fasta search_dbmatched_result1.fasta search_blast6out_result1.tabular |
| Test-2 |
dbmask: none dbfile: three_human_mRNA.fasta adv_opts|userfields_output|userfields: ['query', 'target', 'evalue'] adv_opts|adv_opts_selector: advanced adv_opts|userfields_output|userfields_output_select: yes outputs: ['--fastapairs', '--matched'] adv_opts|output_no_hits: True adv_opts|top_hits_only: True queryfile: query.fasta |
matched: search_matched_result2.fasta fastapairs: search_fastapairs_result2.fasta userout: search_userfields_result2.tabular |
query.fasta three_human_mRNA.fasta search_matched_result2.fasta search_fastapairs_result2.fasta search_userfields_result2.tabular |