Repository revision
4:576963db5f1b

Repository 'vsearch'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/vsearch

VSearch sorting tool metadata
Miscellaneous
vsearch_sorting
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_sorting/1.9.7.0
1.9.7.0
vsearch --version | head -n 1 | awk '{print $2}' | sed 's/,//'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_sorting/1.9.7.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_sorting/1.1.3.0
vsearch_sorting
Requirements (dependencies defined in the <requirements> tag set)
name version type
vsearch 1.9.7 package
Functional tests
name inputs outputs required files
Test-1 sorting_mode|infile: db.fasta
sorting_mode|sorting_mode_select: sortbyabundance
outfile: sorting_result1.fasta
db.fasta
sorting_result1.fasta
Test-2 sorting_mode|infile: db.fasta
sorting_mode|sorting_mode_select: sortbylength
outfile: sorting_result2.fasta
db.fasta
sorting_result2.fasta
Test-3 relabel: TEST
sorting_mode|infile: db.fasta
sorting_mode|sorting_mode_select: sortbylength
outfile: sorting_result3.fasta
db.fasta
sorting_result3.fasta
Test-4 sizeout: True
sorting_mode|infile: db.fasta
sorting_mode|sorting_mode_select: sortbylength
outfile: sorting_result4.fasta
db.fasta
sorting_result4.fasta
Test-5 relabel: With spaces
sorting_mode|infile: db.fasta
sorting_mode|sorting_mode_select: sortbylength
outfile: sorting_result5.fasta
db.fasta
sorting_result5.fasta