Repository revision
1:03b7b7811ea6

Repository 'flair_collapse'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/flair_collapse

FLAIR collapse tool metadata
Miscellaneous
defines high-confidence isoforms from flair-corrected reads
flair_collapse
toolshed.g2.bx.psu.edu/repos/iuc/flair_collapse/flair_collapse/1.5+galaxy0
1.5+galaxy0
flair.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/flair_collapse/flair_collapse/1.5+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/flair_collapse/flair_collapse/1.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/flair_collapse/flair_collapse/1.5
flair_collapse
Requirements (dependencies defined in the <requirements> tag set)
name version type
flair 1.5 package
Functional tests
name inputs outputs required files
Test-1 input_query: flair_all_corrected.bed
input_reads: chrM.fastq.gz
reference_source_genome|reffile: chrM.fa
reference_source_genome|ref_selector_genome: history
input_gtf: UCSC_Main_on_Human_knownGene_region_chrM.gtf
additional_outputs|out_format: ['bed', 'fasta']
name: value
name: value
name: value
flair_all_corrected.bed
chrM.fastq.gz
chrM.fa
UCSC_Main_on_Human_knownGene_region_chrM.gtf
value
Test-2 input_query: flair_all_corrected.bed
input_reads: chrM.fastq.gz
reference_source_genome|reffile: chrM
reference_source_genome|ref_selector_genome: cached
input_gtf: UCSC_Main_on_Human_knownGene_region_chrM.gtf
additional_outputs|out_format: ['bed', 'fasta']
name: value
name: value
name: value
flair_all_corrected.bed
chrM.fastq.gz
UCSC_Main_on_Human_knownGene_region_chrM.gtf
value