Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/flair_collapse/flair_collapse/1.5+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/flair_collapse/flair_collapse/1.5+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/flair_collapse/flair_collapse/1.5 |
flair_collapse |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
flair | 1.5 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_query: flair_all_corrected.bed input_reads: chrM.fastq.gz reference_source_genome|reffile: chrM.fa reference_source_genome|ref_selector_genome: history input_gtf: UCSC_Main_on_Human_knownGene_region_chrM.gtf additional_outputs|out_format: ['bed', 'fasta'] |
name: value name: value name: value |
flair_all_corrected.bed chrM.fastq.gz chrM.fa UCSC_Main_on_Human_knownGene_region_chrM.gtf value |
Test-2 |
input_query: flair_all_corrected.bed input_reads: chrM.fastq.gz reference_source_genome|reffile: chrM reference_source_genome|ref_selector_genome: cached input_gtf: UCSC_Main_on_Human_knownGene_region_chrM.gtf additional_outputs|out_format: ['bed', 'fasta'] |
name: value name: value name: value |
flair_all_corrected.bed chrM.fastq.gz UCSC_Main_on_Human_knownGene_region_chrM.gtf value |