Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0 (this tool) |
qiime_align_seqs |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
qiime | 1.9.1 | package |
infernal | 1.0.2 | package |
clustalw | 2.1 | package |
muscle | 3.8.1551 | package |
mafft | 7.305 | package |
blast-legacy | 2.2.22 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|pairwise_alignment_method: uclust alignment|alignment_method: pynast alignment|template_fp: align_seqs/core_set_aligned.fasta.imputed |
attributes: name attributes: name attributes: name |
align_seqs/unaligned.fna align_seqs/core_set_aligned.fasta.imputed name |
Test-2 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|pairwise_alignment_method: muscle alignment|alignment_method: pynast min_length: 50 |
attributes: name attributes: name attributes: name |
align_seqs/unaligned.fna name |
Test-3 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|pairwise_alignment_method: pair_hmm alignment|alignment_method: pynast |
attributes: name attributes: name attributes: name |
align_seqs/unaligned.fna name |
Test-4 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|pairwise_alignment_method: clustal alignment|alignment_method: pynast |
attributes: name attributes: name attributes: name |
align_seqs/unaligned.fna name |
Test-5 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|pairwise_alignment_method: blast alignment|alignment_method: pynast |
attributes: name attributes: name attributes: name |
align_seqs/unaligned.fna name |
Test-6 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|pairwise_alignment_method: mafft alignment|alignment_method: pynast |
attributes: name attributes: name attributes: name |
align_seqs/unaligned.fna name |
Test-7 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|alignment_method: clustalw |
attributes: name attributes: name |
align_seqs/unaligned.fna name |
Test-8 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|alignment_method: muscle |
attributes: name attributes: name |
align_seqs/unaligned.fna name |
Test-9 |
input_fasta_fp: align_seqs/unaligned.fna min_percent_id: 0.75 alignment|alignment_method: mafft |
attributes: name attributes: name |
align_seqs/unaligned.fna name |