Repository revision
7:e8bb88f051ec

Repository 'qiime_align_seqs'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs

Align sequences tool metadata
Miscellaneous
using a variety of alignment methods (align_seqs)
qiime_align_seqs
toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0
1.9.1.0
align_seqs.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0 (this tool)
qiime_align_seqs
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
infernal 1.0.2 package
clustalw 2.1 package
muscle 3.8.1551 package
mafft 7.305 package
blast-legacy 2.2.22 package
Functional tests
name inputs outputs required files
Test-1 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|pairwise_alignment_method: uclust
alignment|alignment_method: pynast
alignment|template_fp: align_seqs/core_set_aligned.fasta.imputed
attributes: name
attributes: name
attributes: name
align_seqs/unaligned.fna
align_seqs/core_set_aligned.fasta.imputed
name
Test-2 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|pairwise_alignment_method: muscle
alignment|alignment_method: pynast
min_length: 50
attributes: name
attributes: name
attributes: name
align_seqs/unaligned.fna
name
Test-3 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|pairwise_alignment_method: pair_hmm
alignment|alignment_method: pynast
attributes: name
attributes: name
attributes: name
align_seqs/unaligned.fna
name
Test-4 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|pairwise_alignment_method: clustal
alignment|alignment_method: pynast
attributes: name
attributes: name
attributes: name
align_seqs/unaligned.fna
name
Test-5 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|pairwise_alignment_method: blast
alignment|alignment_method: pynast
attributes: name
attributes: name
attributes: name
align_seqs/unaligned.fna
name
Test-6 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|pairwise_alignment_method: mafft
alignment|alignment_method: pynast
attributes: name
attributes: name
attributes: name
align_seqs/unaligned.fna
name
Test-7 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|alignment_method: clustalw
attributes: name
attributes: name
align_seqs/unaligned.fna
name
Test-8 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|alignment_method: muscle
attributes: name
attributes: name
align_seqs/unaligned.fna
name
Test-9 input_fasta_fp: align_seqs/unaligned.fna
min_percent_id: 0.75
alignment|alignment_method: mafft
attributes: name
attributes: name
align_seqs/unaligned.fna
name