| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/biocomp-ibens/alfa/alfa/0.1.0 (this tool) |
| alfa |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.24 | package |
| samtools | 1.2 | package |
| matplotlib | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
outputOptions|plotThreshold|plotThresholdChoice: False reads|readsType|readsList_0|readsLabel: alfa_toy annotation|annotationSource|annotationFile: alfa_toy.gtf outputOptions|categoriesDepth: 3 reads|readsType|readsTypeSelection: bam annotation|annotationSource|annotationSourceSelection: personal_gtf outputFiles|plot: True reads|readsType|readsList_0|readsFile: alfa_toy.bam outputFiles|index: True outputFiles|countFile: True outputOptions|plotFormat: pdf |
attributes: name attributes: name attributes: name attributes: name |
alfa_toy.gtf alfa_toy.bam name |