| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/climate/cdo_operations/cdo_operations/2.0.0+galaxy0 (this tool) |
| cdo_operations |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cdo | 2.0.0 | package |
| Additional information about this tool |
mkdir output_dir &&
cdo
#for $i, $cdo_option in enumerate( $section_option )
#if $cdo_option.option_type.add_opt == '-f'
$cdo_option.option_type.add_opt $cdo_option.option_type.output_format
#elif $cdo_option.option_type.add_opt == '-g'
$cdo_option.option_type.add_opt $cdo_option.option_type.grid
#elif $cdo_option.option_type.add_opt == '-gf'
$cdo_option.option_type.add_opt $cdo_option.option_type.gridfile
#elif $cdo_option.option_type.add_opt == '-m'
$cdo_option.option_type.add_opt $cdo_option.option_type.missval
#elif $cdo_option.option_type.add_opt == '--percentile'
$cdo_option.option_type.add_opt $cdo_option.option_type.percentile
#elif $cdo_option.option_type.add_opt == '--seed'
$cdo_option.option_type.add_opt $cdo_option.option_type.seed
#else
$cdo_option.option_type.add_opt
#end if
#end for
#for $i, $cdo_oper in enumerate( $section_operators )
#if $cdo_oper.operator.opt == 'duplicate'
-'$cdo_oper.operator.opt',$cdo_oper.operator.ndup
#elif $cdo_oper.operator.opt == 'addc' or $cdo_oper.operator.opt == 'subc' or $cdo_oper.operator.opt == 'mulc' or $cdo_oper.operator.opt == 'divc'
-'$cdo_oper.operator.opt',$cdo_oper.operator.const_value
#elif $cdo_oper.operator.opt == 'ens' or $cdo_oper.operator.opt == 'zon' or $cdo_oper.operator.opt == 'tim' or $cdo_oper.operator.opt == 'vert' or $cdo_oper.operator.opt == 'day' or $cdo_oper.operator.opt == 'year' or $cdo_oper.operator.opt == 'mon' or $cdo_oper.operator.opt == 'seas' or $cdo_oper.operator.opt == 'fld'
-'${cdo_oper.operator.opt}${cdo_oper.operator.stat}'
#elif $cdo_oper.operator.opt == 'sp2gp' or $cdo_oper.operator.opt == 'gp2sp'
#if $cdo_oper.operator.trunc > 0
-'$cdo_oper.operator.opt',$cdo_oper.operator.trunc
#else
-'$cdo_oper.operator.opt'
#end if
#elif $cdo_oper.operator.opt == 'collgrid'
#if str($cdo_oper.operator.nx)
#if str($cdo_oper.operator.names)
-'$cdo_oper.operator.opt',$cdo_oper.operator.nx,'$cdo_oper.operator.names'
#else
-'$cdo_oper.operator.opt',$cdo_oper.operator.nx
#end if
#else
-'$cdo_oper.operator.opt'
#end if
#elif $cdo_oper.operator.opt == 'distgrid'
-'$cdo_oper.operator.opt',$cdo_oper.operator.nx,$cdo_oper.operator.ny
#elif $cdo_oper.operator.opt == 'splitsel'
#if str($cdo_oper.operator.noffset)
#if str($cdo_oper.operator.nskip)
-'$cdo_oper.operator.opt',$cdo_oper.operator.nsets,$cdo_oper.operator.noffset,$cdo_oper.operator.nskip
#else
-'$cdo_oper.operator.opt',$cdo_oper.operator.nsets,$cdo_oper.operator.noffset
#end if
#else
-'$cdo_oper.operator.opt',$cdo_oper.operator.nsets
#end if
#elif $cdo_oper.operator.opt == 'select' or $cdo_oper.operator.opt == 'delete' or $cdo_oper.operator.opt == 'selname' or $cdo_oper.operator.opt == 'delname' or $cdo_oper.operator.opt == 'seltimestep' or $cdo_oper.operator.opt == 'sellonlatbox' or $cdo_oper.operator.opt == 'expr' or $cdo_oper.operator.opt == 'ml2pl' or $cdo_oper.operator.opt == 'ml2hl' or $cdo_oper.operator.opt == 'intlevel'
-'$cdo_oper.operator.opt','$cdo_oper.operator.params'
#elif $cdo_oper.operator.opt == 'setattribute'
-'$cdo_oper.operator.opt',FILE='$cdo_oper.operator.attr_file'
#else
-'$cdo_oper.operator.opt'
#end if
#if $cdo_oper.operator.opt == 'copy' or $cdo_oper.operator.opt == 'cat' or $cdo_oper.operator.opt == 'merge' or $cdo_oper.operator.opt == 'mergetime' or $cdo_oper.operator.opt == 'collgrid' or $cdo_oper.operator.opt == 'select' or $cdo_oper.operator.opt == 'delete' or $cdo_oper.operator.opt == 'replace'
#for $ifile in $cdo_oper.operator.add_file
'${ifile}'
#end for
#elif $cdo_oper.operator.add_file and '$cdo_oper.operator.add_file' != '' and '$cdo_oper.operator.add_file' != 'None' and $cdo_oper.operator.add_file is not None
'$cdo_oper.operator.add_file'
#end if
#if $i == 0
#if $cdo_oper.operator.opt == 'splitcode' or $cdo_oper.operator.opt == 'splitparam' or $cdo_oper.operator.opt == 'splitname' or $cdo_oper.operator.opt == 'splitlevel' or $cdo_oper.operator.opt == 'splitgrid' or $cdo_oper.operator.opt == 'splitzaxis' or $cdo_oper.operator.opt == 'splittabnum' or $cdo_oper.operator.opt == 'splithour' or $cdo_oper.operator.opt == 'splitday' or $cdo_oper.operator.opt == 'splitseas' or $cdo_oper.operator.opt == 'splityear' or $cdo_oper.operator.opt == 'splityearmon' or $cdo_oper.operator.opt == 'splitmon'
#set output = 'output_dir/outfile_'
#else
#set output = 'output_dir/outfile.netcdf'
#end if
#end if
#end for
'${output}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
section_operators_0|operator|params: name=Drops section_operators_0|operator|add_file: WMI_Lear.nc section_operators_0|operator|opt: select |
WMI_Lear.nc |
|
| Test-2 |
section_operators_0|operator|add_file: WMI_Lear.nc section_operators_0|operator|opt: copy |
WMI_Lear.nc |
|
| Test-3 |
section_operators_0|operator|add_file: ['drops1.nc', 'drops2.nc'] section_operators_0|operator|opt: cat |
drops1.nc drops2.nc |
|
| Test-4 |
section_operators_0|operator|add_file: lat_long.nc section_operators_0|operator|opt: splitname |
lat_long.nc |
|
| Test-5 |
section_operators_0|operator|add_file: ['lat_long.nc', 'latitude_modified.nc'] section_operators_0|operator|opt: replace |
lat_long.nc latitude_modified.nc |
|
| Test-6 |
section_operators_0|operator|ndup: 3 section_operators_0|operator|add_file: latitude.nc section_operators_0|operator|opt: duplicate |
latitude.nc |
|
| Test-7 |
section_operators_0|operator|params: Drops section_operators_0|operator|add_file: WMI_Lear.nc section_operators_0|operator|opt: selname |
WMI_Lear.nc |
|
| Test-8 |
section_operators_0|operator|params: 1,13,25 section_operators_0|operator|add_file: WMI_Lear.nc section_operators_0|operator|opt: seltimestep |
WMI_Lear.nc |
|
| Test-9 |
section_operators_0|operator|params: -10,10,60,70 section_operators_0|operator|add_file: WMI_Lear.nc section_operators_0|operator|opt: sellonlatbox |
WMI_Lear.nc |
|
| Test-10 |
section_operators_0|operator|add_file: WMI_Lear.nc section_operators_0|operator|opt: invertlat |
WMI_Lear.nc |
|
| Test-11 |
section_operators_0|operator|params: Drops section_operators_0|operator|opt: selname section_operators_1|operator|const_value: 10.5 section_operators_1|operator|add_file: WMI_Lear.nc section_operators_1|operator|opt: addc |
WMI_Lear.nc |
|
| Test-12 |
section_operators_0|operator|params: Drops2=1000*exp(1+Drops) section_operators_0|operator|add_file: WMI_Lear.nc section_operators_0|operator|opt: expr |
WMI_Lear.nc |
|
| Test-13 |
section_operators_0|operator|params: CLEAR_SKY_BHI section_operators_0|operator|opt: selname section_operators_1|operator|stat: avg section_operators_1|operator|add_file: timeseries.nc section_operators_1|operator|opt: tim |
timeseries.nc |
|
| Test-14 |
section_operators_0|operator|add_file: timeseries.nc section_operators_0|operator|opt: sub section_operators_1|operator|const_value: 10.5 section_operators_1|operator|add_file: timeseries.nc section_operators_1|operator|opt: addc |
timeseries.nc |
|
| Test-15 |
section_operators_0|operator|params: -10,10,60,70 section_operators_0|operator|opt: sellonlatbox section_operators_1|operator|attr_file: attributes.txt section_operators_1|operator|add_file: WMI_Lear.nc section_operators_1|operator|opt: setattribute |
attributes.txt WMI_Lear.nc |