Repository revision
12:9d1fbff733cf

Repository 'eggnog_mapper'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper

eggNOG Mapper tool metadata
Miscellaneous
functional sequence annotation by orthology
eggnog_mapper
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.1.8+galaxy3
2.1.8+galaxy3
emapper.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.1.8+galaxy4
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.1.8+galaxy3 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.1.8+galaxy2.1.8
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.1.6+galaxy2
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.1.6+galaxy1
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.0.1+galaxy1
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/1.0.3.1
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/1.0.3
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/1.0.2
toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/1.0.1
eggnog_mapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
eggnog-mapper 2.1.8 package
Functional tests
name inputs outputs required files
Test-1 eggnog_data: 5.0.2
ortho_method|input: Nmar_0135.fa
annotation_options|no_annot: --no_annot
output_options|no_file_comments: True
name: value
Nmar_0135.fa
value
Test-2 eggnog_data: 5.0.2
ortho_method|annotate_hits_table: DIA_nlim.emapper.seed_orthologs
ortho_method|m: no_search
output_options|no_file_comments: True
output_options|report_orthologs: True
name: value
name: value
DIA_nlim.emapper.seed_orthologs
value
Test-3 eggnog_data: 5.0.2
ortho_method|input: Nmar_0135.fa
output_options|no_file_comments: True
output_options|report_orthologs: True
output_options|md5: True
name: value
name: value
name: value
Nmar_0135.fa
value
Test-4 eggnog_data: 5.0.2
ortho_method|input: Nmar_0135.fa
ortho_method|cache: DIA_nlim.emapper.annotations_cached
ortho_method|m: cache
output_options|no_file_comments: True
output_options|report_orthologs: True
output_options|md5: True
name: value
name: value
Nmar_0135.fa
DIA_nlim.emapper.annotations_cached
value
Test-5 eggnog_data: 5.0.2
ortho_method|input: Nmar_0135.fa
annotation_options|tax_scope: 651137
output_options|no_file_comments: True
output_options|report_orthologs: True
name: value
name: value
name: value
Nmar_0135.fa
value
Test-6 eggnog_data: 5.0.2
ortho_method|input: Nmar_0135.fa
ortho_method|sensmode: fast
ortho_method|m: diamond
output_options|no_file_comments: True
output_options|report_orthologs: True
name: value
name: value
name: value
Nmar_0135.fa
value