Repository revision
3:a3613553c65f

Repository 'poppunk'
hg clone https://toolshed.g2.bx.psu.edu/repos/johnlees/poppunk

PopPUNK (cluster) tool metadata
Miscellaneous
Cluster bacterial genomes
poppunk_cluster
toolshed.g2.bx.psu.edu/repos/johnlees/poppunk/poppunk_cluster/1.1.6
1.1.6
poppunk --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/johnlees/poppunk/poppunk_cluster/1.1.6 (this tool)
poppunk_cluster
Requirements (dependencies defined in the <requirements> tag set)
name version type
poppunk 1.1.6 package
Functional tests
name inputs outputs required files
Test-1 viz|microreact: False
input_assemblies: ['12673_8_24.contigs_velvet.fa', '12673_8_34.contigs_velvet.fa', '12673_8_43.contigs_velvet.fa', '12754_4_71.contigs_velvet.fa', '12754_4_77.contigs_velvet.fa']
model|model_mode: gmm
no_full_db: False
model|K: 4
attributes: name
attributes: name
attributes: name
attributes: name
attributes: name
12673_8_24.contigs_velvet.fa
12673_8_34.contigs_velvet.fa
12673_8_43.contigs_velvet.fa
12754_4_71.contigs_velvet.fa
12754_4_77.contigs_velvet.fa
name