Repository revision
36:0a5c785ac6db

Repository 'bedtools'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bedtools

bedtools NucBed tool metadata
Miscellaneous
profile the nucleotide content of intervals in a FASTA file
bedtools_nucbed
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_nucbed/2.29.2
2.29.2
bedtools --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_nucbed/2.29.2 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_nucbed/2.19.0
bedtools_nucbed
Requirements (dependencies defined in the <requirements> tag set)
name version type
bedtools 2.29.2 package
Functional tests
name inputs outputs required files
Test-1 input: nucBed1.bed
fasta: nucBed1.fasta
attributes: name
nucBed1.bed
nucBed1.fasta
name
Test-2 input: nucBed1.bed
fasta: nucBed1.fasta
seq: True
attributes: name
nucBed1.bed
nucBed1.fasta
name
Test-3 input: nucBed1.bed
fasta: nucBed1.fasta
seq: True
pattern: TAC
attributes: name
nucBed1.bed
nucBed1.fasta
name