Repository revision
46:64e2edfe7a2c

Repository 'bedtools'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bedtools

bedtools getfasta tool metadata
Miscellaneous
use intervals to extract sequences from a FASTA file
bedtools_getfastabed
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.31.1+galaxy0
2.31.1+galaxy0
bedtools --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.31.1+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.30.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.30.0
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.29.2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.29.0
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.27.1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.19.0
bedtools_getfastabed
Requirements (dependencies defined in the <requirements> tag set)
name version type
bedtools 2.31.1 package
Functional tests
name inputs outputs required files
Test-1 input: nucBed1.bed
fasta_source|fasta: nucBed1.fasta
nameOnly: False
tab: False
split: False
name: value
nucBed1.bed
nucBed1.fasta
value
Test-2 input: nucBed1.bed
fasta_source|fasta: nucBed1.fasta
nameOnly: False
tab: True
split: False
name: value
nucBed1.bed
nucBed1.fasta
value
Test-3 input: nucBed1.bed
fasta_source|fasta: nucBed1.fasta
name: True
tab: False
split: False
name: value
nucBed1.bed
nucBed1.fasta
value
Test-4 input: nucBed2.bed
fasta_source|fasta: nucBed1.fasta
nameOnly: True
tab: False
split: False
name: value
nucBed2.bed
nucBed1.fasta
value
Test-5 input: nucBed2.bed
fasta_source|fasta_id: testid
fasta_source|fasta_source_selector: preloaded
nameOnly: True
tab: False
split: False
name: value
nucBed2.bed
value