| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.27.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.27.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.27.0.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.27.0.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.27.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.27.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.26.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.26.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.24.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.22.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.19.1 |
| bedtools_coveragebed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.27.1 | package |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputA: coverageBedA.bed reduce_or_iterate|inputB: coverageBedB.bed |
attributes: name |
coverageBedA.bed coverageBedB.bed name |
| Test-2 |
inputA: multiCov1.bed reduce_or_iterate|inputB: srma_in3.bam |
attributes: name |
multiCov1.bed srma_in3.bam name |
| Test-3 |
inputA: multiCov1.bed reduce_or_iterate|reduce_or_iterate_selector: reduce reduce_or_iterate|inputB: srma_in3.bam |
attributes: name |
multiCov1.bed srma_in3.bam name |
| Test-4 |
inputA: coverageBedA.bed reduce_or_iterate|inputB: coverageBedB.bed overlap_b: 1 |
attributes: name |
coverageBedA.bed coverageBedB.bed name |
| Test-5 |
inputA: coverageBedA.bed overlap_a: 1 reduce_or_iterate|inputB: coverageBedB.bed reciprocal_overlap: True |
attributes: name |
coverageBedA.bed coverageBedB.bed name |