| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedpetobam/2.30.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedpetobam/2.30.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedpetobam/2.29.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedpetobam/2.19.0 |
| bedtools_bedpetobam |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.27.1 | package |
| Additional information about this tool |
bedtools bedpetobam
-mapq $mapq
-i '$input'
#if $genome_file_opts.genome
-g
#if $genome_file_opts.genome_file_opts_selector == "loc":
'$genome_file_opts.genome.fields.len_path'
#elif $genome_file_opts.genome_file_opts_selector == "hist":
'$genome_file_opts.genome'
#end if
#end if
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: bedpeToBamBed1.bed genome_file_opts|genome: mm9.len genome_file_opts|genome_file_opts_selector: hist |
name: value |
bedpeToBamBed1.bed mm9.len value |