Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedtobam/2.30.0+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedtobam/2.19.0 |
bedtools_bedtobam |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bedtools | 2.30.0 | package |
Additional information about this tool |
bedtools bedtobam $bed12 -mapq $mapq #if $genome_file_opts.genome -g #if $genome_file_opts.genome_file_opts_selector == "loc": '$genome_file_opts.genome.fields.len_path' #elif $genome_file_opts.genome_file_opts_selector == "hist": '$genome_file_opts.genome' #end if #end if -i '$input' > '$output'
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input: bedToBam1.bed genome_file_opts|genome: mm9_chr1.len genome_file_opts|genome_file_opts_selector: hist |
name: value |
bedToBam1.bed mm9_chr1.len value |