| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_fisher/2.30.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_fisher/2.30.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_fisher/2.29.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_fisher/2.22.0 |
| bedtools_fisher |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
bedtools fisher
$strand
$split
-a '$inputA'
-b '$inputB'
#if str($overlap):
-f $overlap
#end if
#if $genome_file_opts.genome
-g
#if $genome_file_opts.genome_file_opts_selector == "loc":
'$genome_file_opts.genome.fields.len_path'
#elif $genome_file_opts.genome_file_opts_selector == "hist":
'$genome_file_opts.genome'
#end if
#end if
$reciprocal
$m
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputA: fisherBed1.bed inputB: fisherBed2.bed genome_file_opts|genome: fisherBed.len genome_file_opts|genome_file_opts_selector: hist |
name: value |
fisherBed1.bed fisherBed2.bed fisherBed.len value |