| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.22.0 |
| bedtools_genomecoveragebed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
bedtools genomecov
#if $input_type.input_type_select == "bam":
-ibam '$input_type.input'
#else:
-i '$input_type.input'
#if $input_type.genome_file_opts.genome_file_opts_selector == "loc":
-g '$input_type.genome_file_opts.genome.fields.len_path'
#elif $input_type.genome_file_opts.genome_file_opts_selector == "hist":
-g '$input_type.genome_file_opts.genome'
#end if
#end if
$split
$strand
#if str($report.report_select) == "bg":
#if $report.zero_regions:
$report.zero_regions
#else:
-bg
#end if
#if str($report.scale):
-scale $report.scale
#end if
#else:
#if str($report.max):
-max $report.max
#end if
#end if
$d
$dz
$five
$three
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type|input: genomeCoverageBed1.bed input_type|genome_file_opts|genome: genomeCoverageBed1.len input_type|genome_file_opts|genome_file_opts_selector: hist input_type|input_type_select: bed report|report_select: hist |
name: value |
genomeCoverageBed1.bed genomeCoverageBed1.len value |