| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_makewindowsbed/2.30.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_makewindowsbed/2.19.0 |
| bedtools_makewindowsbed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
bedtools makewindows
#if $type.type_select == 'genome':
#if $type.type_select == "genome":
#if $type.genome_file_opts.genome_file_opts_selector == "loc":
-g '$type.genome_file_opts.genome.fields.len_path'
#elif $type.genome_file_opts.genome_file_opts_selector == "hist":
-g '$type.genome_file_opts.genome'
#end if
#end if
#else:
-b '$type.input'
#end if
#if $action.action_select == 'windowsize':
-w $action.windowsize
#if $action.step_size.step_size_select == 'yes':
-s $action.step_size.step_size
#end if
#else:
-n $action.number
#end if
$sourcename
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
type|genome_file_opts|genome: mm9_chr1.len type|genome_file_opts|genome_file_opts_selector: hist type|type_select: genome action|windowsize: 1000000 action|action_select: windowsize |
name: value |
mm9_chr1.len value |
| Test-2 |
type|genome_file_opts|genome: mm9_chr1.len type|genome_file_opts|genome_file_opts_selector: hist type|type_select: genome action|windowsize: 1000000 action|step_size|step_size: 50000 action|step_size|step_size_select: yes action|action_select: windowsize |
name: value |
mm9_chr1.len value |
| Test-3 |
type|genome_file_opts|genome: mm9_chr1.len type|genome_file_opts|genome_file_opts_selector: hist type|type_select: genome action|number: 100 action|action_select: number |
name: value |
mm9_chr1.len value |
| Test-4 |
type|input: makeWindowBed1.bed type|type_select: bed action|number: 15 action|action_select: number |
name: value |
makeWindowBed1.bed value |