| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.30.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.19.0 |
| bedtools_mergebed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
mergeBed
-i '${input}'
$strand
-d $distance
$header
#set $col = list()
#set $op = list()
#for $item in $c_and_o_argument_repeat:
#silent $col.append( str($item.col) )
#silent $op.append( str($item.operation) )
#end for
#if $col:
-c #echo ','.join($col)#
-o #echo ','.join($op)#
#end if
> '${output}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: mergedBed1.bed |
name: value |
mergedBed1.bed value |
| Test-2 |
input: mergedBed2.bed strand: -s |
name: value |
mergedBed2.bed value |
| Test-3 |
input: mergedBed3.bed |
name: value |
mergedBed3.bed value |
| Test-4 |
input: mergedBed4.bed distance: 1000 |
name: value |
mergedBed4.bed value |
| Test-5 |
input: mergedBed4.bed distance: 1000 c_and_o_argument_repeat_0|col: 1 c_and_o_argument_repeat_0|operation: count |
name: value |
mergedBed4.bed value |