| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multicovtbed/2.30.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multicovtbed/2.29.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multicovtbed/2.19.0 |
| bedtools_multicovtbed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
#for $i, $bam in enumerate($bams):
ln -s -f '$bam' ${i}.bam &&
ln -s -f '$bam.metadata.bam_index' ${i}.bam.bai &&
#end for
bedtools multicov
-bed '$input'
-bams
#for $i, $bam in enumerate($bams):
'${i}.bam'
#end for
$strand
#if str($overlap):
-f $overlap
#end if
$reciprocal
$split
-q $q
$duplicate
$failed
$proper
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: multiCov1.bed bams: ['srma_in3.bam', 'srma_in3.bam'] split: False q: 1 |
name: value |
multiCov1.bed srma_in3.bam value |