| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.30.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.29.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.29.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.27.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.19.0 |
| bedtools_multiintersectbed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
bedtools multiinter
$header
$cluster
-filler '${filler}'
$empty.empty_selector
#if $empty.empty_selector == "-empty":
#if $empty.genome_file_opts.genome_file_opts_selector == "loc":
-g '$empty.genome_file_opts.genome.fields.len_path'
#elif $empty.genome_file_opts.genome_file_opts_selector == "hist":
-g '$empty.genome_file_opts.genome'
#end if
#end if
#if str($tag.tag_select) == "tag":
-i
#for $file in $tag.inputs
'$file'
#end for
#else:
-i
#for $file in $tag.beds:
'${file.input}'
#end for
-names
#for $file in $tag.beds:
'{$file.custom_name}'
#end for
#end if
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
tag|inputs: ['multiIntersectBed1.bed', 'multiIntersectBed2.bed', 'multiIntersectBed3.bed'] tag|tag_select: tag empty|empty_selector: |
name: value |
multiIntersectBed1.bed multiIntersectBed2.bed multiIntersectBed3.bed value |
| Test-2 |
tag|inputs: ['multiIntersectBed1.bed', 'multiIntersectBed2.bed', 'multiIntersectBed3.bed'] tag|tag_select: tag empty|empty_selector: header: True |
name: value |
multiIntersectBed1.bed multiIntersectBed2.bed multiIntersectBed3.bed value |
| Test-3 |
tag|inputs: ['multiIntersectBed1.bed', 'multiIntersectBed2.bed', 'multiIntersectBed3.bed'] tag|tag_select: tag empty|genome_file_opts|genome: multiIntersectBed1.len empty|genome_file_opts|genome_file_opts_selector: hist empty|empty_selector: -empty |
name: value |
multiIntersectBed1.bed multiIntersectBed2.bed multiIntersectBed3.bed multiIntersectBed1.len value |