| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_nucbed/2.30.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_nucbed/2.19.0 |
| bedtools_nucbed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
ln -s '$fasta' 'input.fasta' &&
bedtools nuc
$s
$seq
#if str($pattern):
-pattern '$pattern'
$C
#end if
-fi 'input.fasta'
-bed '$input'
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: nucBed1.bed fasta: nucBed1.fasta |
name: value |
nucBed1.bed nucBed1.fasta value |
| Test-2 |
input: nucBed1.bed fasta: nucBed1.fasta seq: True |
name: value |
nucBed1.bed nucBed1.fasta value |
| Test-3 |
input: nucBed1.bed fasta: nucBed1.fasta seq: True pattern: TAC |
name: value |
nucBed1.bed nucBed1.fasta value |